| /* linalg/qrpt.c |
| * |
| * Copyright (C) 1996, 1997, 1998, 1999, 2000 Gerard Jungman, Brian Gough |
| * |
| * This program is free software; you can redistribute it and/or modify |
| * it under the terms of the GNU General Public License as published by |
| * the Free Software Foundation; either version 2 of the License, or (at |
| * your option) any later version. |
| * |
| * This program is distributed in the hope that it will be useful, but |
| * WITHOUT ANY WARRANTY; without even the implied warranty of |
| * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
| * General Public License for more details. |
| * |
| * You should have received a copy of the GNU General Public License |
| * along with this program; if not, write to the Free Software |
| * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. |
| */ |
| |
| #include <config.h> |
| #include <stdlib.h> |
| #include <string.h> |
| #include <gsl/gsl_math.h> |
| #include <gsl/gsl_vector.h> |
| #include <gsl/gsl_matrix.h> |
| #include <gsl/gsl_permute_vector.h> |
| #include <gsl/gsl_blas.h> |
| |
| #include <gsl/gsl_linalg.h> |
| |
| #define REAL double |
| |
| #include "givens.c" |
| #include "apply_givens.c" |
| |
| /* Factorise a general M x N matrix A into |
| * |
| * A P = Q R |
| * |
| * where Q is orthogonal (M x M) and R is upper triangular (M x N). |
| * When A is rank deficient, r = rank(A) < n, then the permutation is |
| * used to ensure that the lower n - r rows of R are zero and the first |
| * r columns of Q form an orthonormal basis for A. |
| * |
| * Q is stored as a packed set of Householder transformations in the |
| * strict lower triangular part of the input matrix. |
| * |
| * R is stored in the diagonal and upper triangle of the input matrix. |
| * |
| * P: column j of P is column k of the identity matrix, where k = |
| * permutation->data[j] |
| * |
| * The full matrix for Q can be obtained as the product |
| * |
| * Q = Q_k .. Q_2 Q_1 |
| * |
| * where k = MIN(M,N) and |
| * |
| * Q_i = (I - tau_i * v_i * v_i') |
| * |
| * and where v_i is a Householder vector |
| * |
| * v_i = [1, m(i+1,i), m(i+2,i), ... , m(M,i)] |
| * |
| * This storage scheme is the same as in LAPACK. See LAPACK's |
| * dgeqpf.f for details. |
| * |
| */ |
| |
| int |
| gsl_linalg_QRPT_decomp (gsl_matrix * A, gsl_vector * tau, gsl_permutation * p, int *signum, gsl_vector * norm) |
| { |
| const size_t M = A->size1; |
| const size_t N = A->size2; |
| |
| if (tau->size != GSL_MIN (M, N)) |
| { |
| GSL_ERROR ("size of tau must be MIN(M,N)", GSL_EBADLEN); |
| } |
| else if (p->size != N) |
| { |
| GSL_ERROR ("permutation size must be N", GSL_EBADLEN); |
| } |
| else if (norm->size != N) |
| { |
| GSL_ERROR ("norm size must be N", GSL_EBADLEN); |
| } |
| else |
| { |
| size_t i; |
| |
| *signum = 1; |
| |
| gsl_permutation_init (p); /* set to identity */ |
| |
| /* Compute column norms and store in workspace */ |
| |
| for (i = 0; i < N; i++) |
| { |
| gsl_vector_view c = gsl_matrix_column (A, i); |
| double x = gsl_blas_dnrm2 (&c.vector); |
| gsl_vector_set (norm, i, x); |
| } |
| |
| for (i = 0; i < GSL_MIN (M, N); i++) |
| { |
| /* Bring the column of largest norm into the pivot position */ |
| |
| double max_norm = gsl_vector_get(norm, i); |
| size_t j, kmax = i; |
| |
| for (j = i + 1; j < N; j++) |
| { |
| double x = gsl_vector_get (norm, j); |
| |
| if (x > max_norm) |
| { |
| max_norm = x; |
| kmax = j; |
| } |
| } |
| |
| if (kmax != i) |
| { |
| gsl_matrix_swap_columns (A, i, kmax); |
| gsl_permutation_swap (p, i, kmax); |
| gsl_vector_swap_elements(norm,i,kmax); |
| |
| (*signum) = -(*signum); |
| } |
| |
| /* Compute the Householder transformation to reduce the j-th |
| column of the matrix to a multiple of the j-th unit vector */ |
| |
| { |
| gsl_vector_view c_full = gsl_matrix_column (A, i); |
| gsl_vector_view c = gsl_vector_subvector (&c_full.vector, |
| i, M - i); |
| double tau_i = gsl_linalg_householder_transform (&c.vector); |
| |
| gsl_vector_set (tau, i, tau_i); |
| |
| /* Apply the transformation to the remaining columns */ |
| |
| if (i + 1 < N) |
| { |
| gsl_matrix_view m = gsl_matrix_submatrix (A, i, i + 1, M - i, N - (i+1)); |
| |
| gsl_linalg_householder_hm (tau_i, &c.vector, &m.matrix); |
| } |
| } |
| |
| /* Update the norms of the remaining columns too */ |
| |
| if (i + 1 < M) |
| { |
| for (j = i + 1; j < N; j++) |
| { |
| double x = gsl_vector_get (norm, j); |
| |
| if (x > 0.0) |
| { |
| double y = 0; |
| double temp= gsl_matrix_get (A, i, j) / x; |
| |
| if (fabs (temp) >= 1) |
| y = 0.0; |
| else |
| y = x * sqrt (1 - temp * temp); |
| |
| /* recompute norm to prevent loss of accuracy */ |
| |
| if (fabs (y / x) < sqrt (20.0) * GSL_SQRT_DBL_EPSILON) |
| { |
| gsl_vector_view c_full = gsl_matrix_column (A, j); |
| gsl_vector_view c = |
| gsl_vector_subvector(&c_full.vector, |
| i+1, M - (i+1)); |
| y = gsl_blas_dnrm2 (&c.vector); |
| } |
| |
| gsl_vector_set (norm, j, y); |
| } |
| } |
| } |
| } |
| |
| return GSL_SUCCESS; |
| } |
| } |
| |
| int |
| gsl_linalg_QRPT_decomp2 (const gsl_matrix * A, gsl_matrix * q, gsl_matrix * r, gsl_vector * tau, gsl_permutation * p, int *signum, gsl_vector * norm) |
| { |
| const size_t M = A->size1; |
| const size_t N = A->size2; |
| |
| if (q->size1 != M || q->size2 !=M) |
| { |
| GSL_ERROR ("q must be M x M", GSL_EBADLEN); |
| } |
| else if (r->size1 != M || r->size2 !=N) |
| { |
| GSL_ERROR ("r must be M x N", GSL_EBADLEN); |
| } |
| else if (tau->size != GSL_MIN (M, N)) |
| { |
| GSL_ERROR ("size of tau must be MIN(M,N)", GSL_EBADLEN); |
| } |
| else if (p->size != N) |
| { |
| GSL_ERROR ("permutation size must be N", GSL_EBADLEN); |
| } |
| else if (norm->size != N) |
| { |
| GSL_ERROR ("norm size must be N", GSL_EBADLEN); |
| } |
| |
| gsl_matrix_memcpy (r, A); |
| |
| gsl_linalg_QRPT_decomp (r, tau, p, signum, norm); |
| |
| /* FIXME: aliased arguments depends on behavior of unpack routine! */ |
| |
| gsl_linalg_QR_unpack (r, tau, q, r); |
| |
| return GSL_SUCCESS; |
| } |
| |
| |
| /* Solves the system A x = b using the Q R P^T factorisation, |
| |
| R z = Q^T b |
| |
| x = P z; |
| |
| to obtain x. Based on SLATEC code. */ |
| |
| int |
| gsl_linalg_QRPT_solve (const gsl_matrix * QR, |
| const gsl_vector * tau, |
| const gsl_permutation * p, |
| const gsl_vector * b, |
| gsl_vector * x) |
| { |
| if (QR->size1 != QR->size2) |
| { |
| GSL_ERROR ("QR matrix must be square", GSL_ENOTSQR); |
| } |
| else if (QR->size1 != p->size) |
| { |
| GSL_ERROR ("matrix size must match permutation size", GSL_EBADLEN); |
| } |
| else if (QR->size1 != b->size) |
| { |
| GSL_ERROR ("matrix size must match b size", GSL_EBADLEN); |
| } |
| else if (QR->size2 != x->size) |
| { |
| GSL_ERROR ("matrix size must match solution size", GSL_EBADLEN); |
| } |
| else |
| { |
| gsl_vector_memcpy (x, b); |
| |
| gsl_linalg_QRPT_svx (QR, tau, p, x); |
| |
| return GSL_SUCCESS; |
| } |
| } |
| |
| int |
| gsl_linalg_QRPT_svx (const gsl_matrix * QR, |
| const gsl_vector * tau, |
| const gsl_permutation * p, |
| gsl_vector * x) |
| { |
| if (QR->size1 != QR->size2) |
| { |
| GSL_ERROR ("QR matrix must be square", GSL_ENOTSQR); |
| } |
| else if (QR->size1 != p->size) |
| { |
| GSL_ERROR ("matrix size must match permutation size", GSL_EBADLEN); |
| } |
| else if (QR->size2 != x->size) |
| { |
| GSL_ERROR ("matrix size must match solution size", GSL_EBADLEN); |
| } |
| else |
| { |
| /* compute sol = Q^T b */ |
| |
| gsl_linalg_QR_QTvec (QR, tau, x); |
| |
| /* Solve R x = sol, storing x inplace in sol */ |
| |
| gsl_blas_dtrsv (CblasUpper, CblasNoTrans, CblasNonUnit, QR, x); |
| |
| gsl_permute_vector_inverse (p, x); |
| |
| return GSL_SUCCESS; |
| } |
| } |
| |
| |
| int |
| gsl_linalg_QRPT_QRsolve (const gsl_matrix * Q, const gsl_matrix * R, |
| const gsl_permutation * p, |
| const gsl_vector * b, |
| gsl_vector * x) |
| { |
| if (Q->size1 != Q->size2 || R->size1 != R->size2) |
| { |
| return GSL_ENOTSQR; |
| } |
| else if (Q->size1 != p->size || Q->size1 != R->size1 |
| || Q->size1 != b->size) |
| { |
| return GSL_EBADLEN; |
| } |
| else |
| { |
| /* compute b' = Q^T b */ |
| |
| gsl_blas_dgemv (CblasTrans, 1.0, Q, b, 0.0, x); |
| |
| /* Solve R x = b', storing x inplace */ |
| |
| gsl_blas_dtrsv (CblasUpper, CblasNoTrans, CblasNonUnit, R, x); |
| |
| /* Apply permutation to solution in place */ |
| |
| gsl_permute_vector_inverse (p, x); |
| |
| return GSL_SUCCESS; |
| } |
| } |
| |
| int |
| gsl_linalg_QRPT_Rsolve (const gsl_matrix * QR, |
| const gsl_permutation * p, |
| const gsl_vector * b, |
| gsl_vector * x) |
| { |
| if (QR->size1 != QR->size2) |
| { |
| GSL_ERROR ("QR matrix must be square", GSL_ENOTSQR); |
| } |
| else if (QR->size1 != b->size) |
| { |
| GSL_ERROR ("matrix size must match b size", GSL_EBADLEN); |
| } |
| else if (QR->size2 != x->size) |
| { |
| GSL_ERROR ("matrix size must match x size", GSL_EBADLEN); |
| } |
| else if (p->size != x->size) |
| { |
| GSL_ERROR ("permutation size must match x size", GSL_EBADLEN); |
| } |
| else |
| { |
| /* Copy x <- b */ |
| |
| gsl_vector_memcpy (x, b); |
| |
| /* Solve R x = b, storing x inplace */ |
| |
| gsl_blas_dtrsv (CblasUpper, CblasNoTrans, CblasNonUnit, QR, x); |
| |
| gsl_permute_vector_inverse (p, x); |
| |
| return GSL_SUCCESS; |
| } |
| } |
| |
| |
| int |
| gsl_linalg_QRPT_Rsvx (const gsl_matrix * QR, |
| const gsl_permutation * p, |
| gsl_vector * x) |
| { |
| if (QR->size1 != QR->size2) |
| { |
| GSL_ERROR ("QR matrix must be square", GSL_ENOTSQR); |
| } |
| else if (QR->size2 != x->size) |
| { |
| GSL_ERROR ("matrix size must match x size", GSL_EBADLEN); |
| } |
| else if (p->size != x->size) |
| { |
| GSL_ERROR ("permutation size must match x size", GSL_EBADLEN); |
| } |
| else |
| { |
| /* Solve R x = b, storing x inplace */ |
| |
| gsl_blas_dtrsv (CblasUpper, CblasNoTrans, CblasNonUnit, QR, x); |
| |
| gsl_permute_vector_inverse (p, x); |
| |
| return GSL_SUCCESS; |
| } |
| } |
| |
| |
| |
| /* Update a Q R P^T factorisation for A P= Q R , A' = A + u v^T, |
| |
| Q' R' P^-1 = QR P^-1 + u v^T |
| = Q (R + Q^T u v^T P ) P^-1 |
| = Q (R + w v^T P) P^-1 |
| |
| where w = Q^T u. |
| |
| Algorithm from Golub and Van Loan, "Matrix Computations", Section |
| 12.5 (Updating Matrix Factorizations, Rank-One Changes) */ |
| |
| int |
| gsl_linalg_QRPT_update (gsl_matrix * Q, gsl_matrix * R, |
| const gsl_permutation * p, |
| gsl_vector * w, const gsl_vector * v) |
| { |
| if (Q->size1 != Q->size2 || R->size1 != R->size2) |
| { |
| return GSL_ENOTSQR; |
| } |
| else if (R->size1 != Q->size2 || v->size != Q->size2 || w->size != Q->size2) |
| { |
| return GSL_EBADLEN; |
| } |
| else |
| { |
| size_t j, k; |
| const size_t M = Q->size1; |
| const size_t N = Q->size2; |
| double w0; |
| |
| /* Apply Given's rotations to reduce w to (|w|, 0, 0, ... , 0) |
| |
| J_1^T .... J_(n-1)^T w = +/- |w| e_1 |
| |
| simultaneously applied to R, H = J_1^T ... J^T_(n-1) R |
| so that H is upper Hessenberg. (12.5.2) */ |
| |
| for (k = N - 1; k > 0; k--) |
| { |
| double c, s; |
| double wk = gsl_vector_get (w, k); |
| double wkm1 = gsl_vector_get (w, k - 1); |
| |
| create_givens (wkm1, wk, &c, &s); |
| apply_givens_vec (w, k - 1, k, c, s); |
| apply_givens_qr (M, N, Q, R, k - 1, k, c, s); |
| } |
| |
| w0 = gsl_vector_get (w, 0); |
| |
| /* Add in w v^T (Equation 12.5.3) */ |
| |
| for (j = 0; j < N; j++) |
| { |
| double r0j = gsl_matrix_get (R, 0, j); |
| size_t p_j = gsl_permutation_get (p, j); |
| double vj = gsl_vector_get (v, p_j); |
| gsl_matrix_set (R, 0, j, r0j + w0 * vj); |
| } |
| |
| /* Apply Givens transformations R' = G_(n-1)^T ... G_1^T H |
| Equation 12.5.4 */ |
| |
| for (k = 1; k < N; k++) |
| { |
| double c, s; |
| double diag = gsl_matrix_get (R, k - 1, k - 1); |
| double offdiag = gsl_matrix_get (R, k, k - 1); |
| |
| create_givens (diag, offdiag, &c, &s); |
| apply_givens_qr (M, N, Q, R, k - 1, k, c, s); |
| } |
| |
| return GSL_SUCCESS; |
| } |
| } |